# Spelling corrections for atom labels and abbreviations
# that might not be correctly parsed by OCR engine
# You can run osra with -d option to check the spelling correction
# process - the output looks like:
# OCR string --> Corrected String --> Final Output
# Note that by default OSRA might try as many as 3 different resolutions
# so you may have quite a bit of output to look through. Try a specific
# resolution (with -r switch) or choose the best match.
# Empty lines are ignored and lines starting with # are comments

Ci  Cl
Cf  Cl
Cll Cl
T*l Cl
cl  Cl
Gl  Cl
C7  Cl
4l  Cl

HN  N
NH  N
M   N 
Hm  N
MN  N
N2  N
NM  N
NH2 N
H2N N
NHZ N
HZN N
NH3 N
nu  N 
Hu  N  
lU  N  
HlU N 
lUH N 
H2Y N
RN  N
MH  N
M2M N
M   N
HnN N
nIH N
NHX N
mH  N
NN  N
hN  N
Nh  N
N*  N
NlH2 N
HY N
4N N
NN* N
TN N
H4 N
NY N
M4 N
4 N
Y N
*N N
lmllI N
lm N
H2M N
ll2N N
YH N
HM N
mN N
HD N
uN N
nN N
H7N N
llI N
H2llI N
MH2 N
Ill N
NNH N
Nm2 N
NT N
IN N

OH  O  
oH  O  
Ho  O  
HO  O  
ol  O
On  O  
on  O  
no  O  
nO  O  
ON  O
oN  O
O4  O
OM  O
Un  O
4O  O
Mo  O
nU  O
UnH O
nUH O
HOl O
IO O
OI O
nH O
nHH O
QH O
Ol O
Q O
U O
eO O
IlH O
*H O
Oll O
UH O
4H O
oll O
hO O
lOHO O
9 O
mn O
OHH O
MO O
OhN O

Meo MeO 
oMe MeO  
oMg MeO  
omg MeO  
Mgo MeO 
leo MeO  
ohle MeO  
lleo MeO  
olllle MeO  
OMe MeO  
OM8 MeO  
OMo MeO  
OMB MeO  
OCH3 MeO  
OCHS MeO  
H3CO MeO  
OM4 MeO
ocH MeO
OM6 MeO
M6O MeO
OMR MeO
OMoo MeO
OmB MeO
MoO MeO
M*O MeO
McoO MeO
Ome MeO
MgO MeO
M8O MeO
MBO MeO
Ohle MeO
CO MeO
H9Co MeO
H3CQ MeO
H2CO MeO

NC CN 
YC CN
Nc CN
cN CN
3N CN

nBU nBu
neU nBu 
ngU nBu
n8U nBu
BU nBu

Eto EtO
oEt EtO
Elo EtO
oEl EtO
ElO EtO
OEl EtO
OC2H EtO
OCH2CH3 EtO
CH3CH2O EtO
OElH EtO
OE EtO
OFl EtO
Om EtO
OEE EtO
CH3CO EtO
OC2H5 EtO
C2O EtO

olgU OiBu
oleU OiBu
OlBU OiBu

npr iPr
llpll iPr
lpl iPr
npl iPr
lPl iPr
nPl iPr

tBU tBu
llBU tBu
lBU tBu
IBU tBu

CooH COOH
HooC COOH
Co2H COOH
CO2H COOH
HOOC COOH
CO2n COOH
co2H COOH
CO2  COOH
COOl COOH
COH COOH
CChH COOH
33c COOH
COO COOH

AC Ac
pC Ac
pc Ac

ACo AcO
opC AcO
pcO AcO
ACO AcO
oCO AcO
OoC AcO
OpC AcO
pCO AcO
RCO AcO
ORC AcO
OnC AcO
OAc AcO
nCO AcO
Rco AcO
oRc AcO
OAC AcO
oAC AcO

Bl Br
el Br
BC Br
BF Br
Bll Br
BT Br
8l Br

# Need to distinguish between a recognized label for methyl and
# the default empty string for carbon
CH3 Me
H3C Me
CH Me
CH2 Me
HC Me
hle Me
M8 Me
MB Me
MR Me
Me Me
H2C Me
3C Me
Cm Me
GH8 Me
CHl Me
Y* Me
H* Me
Cm3 Me
CH* Me
H*C Me
cH Me
C4m Me
CH3H Me
C3 Me
GH Me
cH3 Me
Cun3 Me
G Me
ClI Me
DH3 Me
H3G Me

pl Ar
nl Ar

oX Ox

NoZ NO2
o2N NO2
No2 NO2
No NO2
O2N NO2
NOZ NO2
MO2 NO2
NCh NO2

F3C CF3
CF CF3
FC CF3
Co CF3
F8l CF3
CFS CF3
FSC CF3
CFl3 CF3
CE3 CF3
CFE3 CF3
E3 CF3
OE3 CF3
FH3C CF3

CFH2 CF2H
CF2 CF2H
CF2El CF2H
CFH CF2H

F3Co F3CN

S3 S 
Se S 
lS S 
8 S 
SH S 
HS S 
5 S
F* S

O2S SO2
NON SO2

lH H
1H H
lI H

AcNH NHAc
AcHN NHAc
ACNH NHAc
NHnC NHAc
pCNH NHAc
NHpC NHAc
lCnuH NHAc
NHAC NHAc
CH3CONH NHAc

OlHP THPO
lHPO THPO
lNpo THPO
olHp THPO


NlOHCH3 NOHCH3

HO3S SO3H
so3H SO3H
Ho3s SO3H
SO3  SO3H
SUn3 SO3H
3S SO3H
sO SO3H
sO3 SO3H
SO3E3 SO3H
SO3lC SO3H
SO3lE SO3H
SO3EE SO3H
SO3El SO3H
SO3ll SO3H
SOH SO3H
SgH SO3H

SO3NOn SO3Na
SO3Yl SO3Na
SO3NI SO3Na

NMe MeN
NHMe MeN
NHMF MeN
NHlME MeN

RO OR
oR OR
Ro OR

lHPO THPO
OlHP THPO

NCOlRlH3 N(OH)CH3

pZO BzO
p2O BzO
OBX BzO
BZO BzO
B2O BzO
OB2 BzO
OBz BzO
OBZ BzO
Blo BzO
BZC BzO
EBZO BzO
CBZ BzO
B2C BzO
CUhZ BzO
ChuZ BzO
CuhZ BzO
Chu2 BzO

Sl Si
5l Si

CO2El CO2Et
COOEl CO2Et
COOEt CO2Et
COOC2H CO2Et
COOC2H6 CO2Et
CO2CH2CH3 CO2Et
COOCH2CH3 CO2Et
CO2C2H5 CO2Et
COEl CO2Et
COHEl CO2Et
COOMe CO2Me
COOCH3 CO2Me
CO2CH3 CO2Me
H3COOC CO2Me
HUn2C COOH
CO2E  CO2Et
EO   EtO
HO2C COOH
CUn2H COOH
CnU2H COOH
MeHN MeN
n2N N
El Et
CH2CH3 Et
CH3CH2 Et
C2H5 Et
H5C2 Et
G2H5 Et
OBn BnO
O8n BnO
8nO BnO
BllO BnO
HNZ ZNH
ZHN ZNH
HNAm AmNH
OAm AmO
AmOOC AmO2C
CO2Am AmO2C
COOAm AmO2C
SAm AmS
HNBn BnNH
BnN BnNH
CO2Bn BnO2C
BnOOC BnO2C
COOBn BnO2C
SnBu3 Bu3Sn
HNBu BuNH
OBu BuO
CO2Bu BuO2C
COOBu BuO2C
BuOOC BuO2C
SBu BuS
Br3C CBr3
HNCbz CbzNH
Cl3C CCl3
OCH CHO
OHC CHO
O2SCl ClSO2
SO2Cl ClSO2
MeO2C CO2Me
OSO2Me MeO2SO
BrOC COBr
BuOC COBu
F3COC COCF3
ClOC COCl
Cncl COCl
OCOC COCO
EtOC COEt
FOC COF
MeOC COMe
H3COC COMe
Et2NOC CONEt2
NH2OC  CONH2
EtHNOC CONHEt
MeHNOC CONHMe
Me2NOC CONMe2
HSOC  COSH
NEt2  Et2N
El2N  Et2N
NE2   Et2N
E2N   Et2N
CC2Hl2N Et2N
NCC2Hl2 Et2N
C2l2N Et2N
lC2H5ll2N Et2N
NEt3  Et3N
HNEt  EtNH
ElHN EtNH
SO2NH2  H2NSO2
H2NO2S  H2NSO2
SO2N H2NSO2
HNOH  HONH
NMe2  Me2N
CH3Cl2N Me2N
MeNH MeN
HNMe MeN
MeOOC CO2Me
OMs  MsO
OMS  MsO
MSO MsO
OCN NCO
SCN NCS
AmHN  NHAm
BnHN  NHBn
BuHN  NHBu
EtHN  NHEt
HOHN NHOH
PrHN  NHPr
ON NO
Et2OP  POEt2
Et3OP  POEt3
Et2OOP  POOEt2
HNPr PrNH
EtS SEt
SMe MeS
SCH3 MeS
Pll Ph
Pl  Ph
ElO2C CO2Et
EtOOC CO2Et
ElOOC CO2Et

OlOS OTos
OTOS OTos
CH2CH CH2CH3
CHCH3 CH2CH3
H3CHC CH2CH3
H3CH2C CH2CH3
CCH3CH2l2N N(CH2CH3)2
NCCH2CH3l2 N(CH2CH3)2
CCH3CHl2N  N(CH2CH3)2
NCCH N(CH2CH3)2
NCCH2CH2CH3l2 N(CH2CH2CH3)2
CCCH3l3 C(CH3)3
CHCCH3l2 CH(CH3)2
ZCH*lH* CH(CH3)2
ZCH*H* CH(CH3)2
CH3Cl2HC CH(CH3)2
OCH2CO2El OCH2CO2Et
CBOCl2N BOC2N
NCBOCl2 BOC2N
NHBOC BOCHN
MBOC BOCHN
NBOC BOCHN
NHCRZ NHCbz
NClZ NHCbz
NHClZ NHCbz
NHCDZ NHCbz
F3CO OCF3
Cl3CO OCCl3
NSO2BU NHSO2BU
NHSO2CH3 NHSO2Me
ElOCHN  EtO2CHN
ElO2CHl EtO2CHN
NHCOOEl NHCOOEt
OEl2 OEt2
CH2OH HOCH2
NHCH NHCH3
NCH3 NHCH3
NO3S H4NO3S
NOOC H4NOOC
C3H C3H7
CH2CH2CH3 C3H7
C2H C2H5
NNH2 NHNH2
H3CS MeS
NHNHCOCH NHNHCOCH3
NNCOCH3  NHNHCOCH3
NHNHCOCF NHNHCOCF3
NNCOCF3  NHNHCOCF3
CO2CYSP  CO2CysPr
COCYSPl  CO2CysPr
CO2CYSPl CO2CysPr
CF3CH CF3CH2
PPll2 PPh2
Pll2P PPh2
Ph2P  PPh2
PPh PPh2
CO2M8 CO2Me
OCH2Pll OCH2Ph
PMoN PMBN
lCO AcO
XCO AcO
OXC AcO
CH3O MeO
O3S SO3H
NXeOH2C CH2OMe
CH2ONXe CH2OMe
CHOMe CH2OMe
MeOHC CH2OMe
CH3OCH2 CH2OMe
CH2OCH3 CH2OMe
H3COH2C CH2OMe
CH2OCHS CH2OMe
CH2OCT3 CH2OMe
CHlOCH2 CH2OMe
*H3uCH2 CH2OMe
N3Cl NH3Cl
MeCHlN MeN
NCHlMe MeN
ElCHlN NHEt
NCHlEl NHEt
OCH2Pll OCH2Ph
OCH2P OCH2Ph
COOCH2P COOCH2Ph
NeO MeO
ONe MeO
OCPh3 Ph3CO
SO2CH3 SO2Me
H3CO2S SO2Me
CH3SO2 SO2Me
SQ2me SO2Me
Sol SO2Me

POIOEII2 POOEt2
OSO2Me MsO
CH2I5Bl (CH2)5Br
ICH2I5Bl (CH2)5Br
CH2I5 (CH2)5
TOS Tos
PhO OPh
PhS SPh
PhHN NHPh

Rl R1
Rlo R10
Rg R9
Rp R4
2 Z
RlO R10
Y2 Y2

PMRN PMBN

* Xx
** Xx
*** Xx
ln4 Xx

COnM* COONa
CnoN COONa
QOC COONa
NDOC COONa
COON* COONa

SlMe3 SiMe3
SMe3  SiMe3

m9    [Mg]

OS Os
Il Ir
ClCl3 CrCl3
IlI3C2N NMe2
C2OH4l C20H41
C2oH4l C20H41
CBHl3 C6H13
C8Hl3 C6H13
C*Hl3 C6H13
C5Hl3 C6H13
C8Hl C8H17

TlHN TrHN
TrN TrHN
TrNH TrHN

TlO TrO

Gu Cu
lII I
PH P

CCF2l8H (CF2)8H
COOET COOK
CO2CCCH3l3 BOC
CCF2l5H (CF2)6H
CCCH3lll3 tBu
OTlI OTf
OSO3 OSO3H
OCH2OC2H OCH2OC2H5
NHCl8H3l NHC18H37
NCCH3l2 NMe2
NCCH2CH2CH2CH3l2 N(CH2CH2CH2CH3)2
CCH3CH2CH2CH2l2N N(CH2CH2CH2CH3)2
H3lCl8 C18H37
H3CO2SHNH2CH2C CH2CH2NHSO2CH3 
H23Cl C11H23
H11C C5H11
CloH2l C10H21
ClOH2l C10H21
Cl8H3lHNOC C18H31HNOC
CH4NOl2 (H4NO)2
CCH3lll3C C(CH3)3
CCH2lIllMe (CH2)11Me
CCH2lIl5Me (CH2)16Me
C9Hl9 C9H19
C3l2N N(CH2CH2CH3)2

# chains - resolved throuhg chain.txt not superatom.txt
GH2 CH2
CCHl2l CH2CH2
CH2T2 CH2CH2
CHCH2 CH2CH2
ICH2T3 CH2CH2CH2
CH2CHeCH2 CH2CH2CH2
CCH2l3 CH2CH2CH2
CCH2lll4 CH2CH2CH2CH2
ICH2T4  CH2CH2CH2CH2
CH2CH2CH2CH CH2CH2CH2CH2
HCH2CH2CH2C CH2CH2CH2CH2
CCH*e CH2CH2CH2CH2CH2
ICH2T5 CH2CH2CH2CH2CH2CH2
CH2TlO CH2CH2CH2CH2CH2CH2CH2CH2CH2CH2
ICH2TlO CH2CH2CH2CH2CH2CH2CH2CH2CH2CH2
ICH3TlO CH2CH2CH2CH2CH2CH2CH2CH2CH2CH2
CCH2l4O (CH2)4O
ON* ONa
ONI ONa
ONOn ONa
ONl ONa
H9 Hg
AS As
AU Au
